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Thermus thermophilus DNAJ J- and G/F-DOMAINS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP PEG1500 15%, 0.1 M STRONTIUM CHLORIDE , VAPOR DIFFUSION, HANGING DROP
Crystal Properties Matthews coefficient Solvent content 1.98 37.95
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 85.99 α = 90 b = 85.99 β = 90 c = 72.72 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 90 CCD MARMOSAIC 225 mm CCD LN2 COOLED FIXED-EXIT SI(111) MONOCHROMATOR, DYNAMICALLY BENDABLE MIRROR 2006-02-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) CC (Half) R Split (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.64 40 97.7 0.066 12.5 72046
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Rrim I (All) Rpim I (All) CC (Half) R Split (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.64 1.7 0.353 2.8
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Cut-off Sigma (I) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION RIPAS 1.64 37.24 68483 3545 97.8 0.216 0.214 0.246 0.2866 THIN RESOLUTION SHELLS 36.039
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.1 -0.05 -0.1 0.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.289 r_dihedral_angle_3_deg 13.572 r_dihedral_angle_1_deg 10.898 r_dihedral_angle_4_deg 10.888 r_scangle_it 4.572 r_mcangle_it 3.961 r_angle_other_deg 3.583 r_scbond_it 3.208 r_mcbond_it 2.821 r_angle_refined_deg 1.174
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.289 r_dihedral_angle_3_deg 13.572 r_dihedral_angle_1_deg 10.898 r_dihedral_angle_4_deg 10.888 r_scangle_it 4.572 r_mcangle_it 3.961 r_angle_other_deg 3.583 r_scbond_it 3.208 r_mcbond_it 2.821 r_angle_refined_deg 1.174 r_nbd_other 0.205 r_nbd_refined 0.197 r_nbtor_refined 0.187 r_symmetry_vdw_other 0.17 r_symmetry_hbond_refined 0.147 r_xyhbond_nbd_refined 0.128 r_nbtor_other 0.102 r_chiral_restr 0.071 r_symmetry_vdw_refined 0.063 r_bond_refined_d 0.01 r_gen_planes_other 0.005 r_gen_planes_refined 0.004 r_bond_other_d r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4918 Nucleic Acid Atoms Solvent Atoms 342 Heterogen Atoms 18
Software Software Software Name Purpose SHARP phasing REFMAC refinement XDS data reduction XSCALE data scaling