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Crystal structure of human GLTP bound with 12:0 disulfatide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3RZN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 298 15%PEG 3350, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.27 45.71
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.768 α = 90 b = 50.163 β = 118.82 c = 65.85 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate 2010-09-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE BRUKER AXS MICROSTAR 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 50 97.7 19652 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.86 96.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3RZN 1.8 15 2 19825 18508 949 97.81 0.18663 0.18663 0.18345 0.25053 0.1989 RANDOM 25.389
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.17 -0.65 -1.1 1.64
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.273 r_dihedral_angle_3_deg 14.096 r_dihedral_angle_4_deg 13.953 r_dihedral_angle_1_deg 5.097 r_scangle_it 2.891 r_scbond_it 2.06 r_angle_refined_deg 1.383 r_angle_other_deg 1.331 r_mcangle_it 1.176 r_mcbond_it 1.084
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.273 r_dihedral_angle_3_deg 14.096 r_dihedral_angle_4_deg 13.953 r_dihedral_angle_1_deg 5.097 r_scangle_it 2.891 r_scbond_it 2.06 r_angle_refined_deg 1.383 r_angle_other_deg 1.331 r_mcangle_it 1.176 r_mcbond_it 1.084 r_nbd_refined 0.231 r_mcbond_other 0.206 r_symmetry_vdw_other 0.188 r_symmetry_hbond_refined 0.187 r_nbtor_refined 0.186 r_nbd_other 0.182 r_xyhbond_nbd_refined 0.172 r_symmetry_vdw_refined 0.158 r_nbtor_other 0.087 r_chiral_restr 0.08 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1668 Nucleic Acid Atoms Solvent Atoms 160 Heterogen Atoms 53
Software Software Software Name Purpose MAR345dtb data collection MOLREP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling