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Carboxypeptidase T with L-BENZYLSUCCINIC ACID
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 COUNTER-DIFFUSION 273 Counter diffusion, temperature 273K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 157.939 α = 90 b = 157.939 β = 90 c = 104.437 γ = 120
Symmetry Space Group P 63 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2011-10-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL41XU 0.8 SPring-8 BL41XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.57 30 98.2 103675 101808 -3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.57 10 98844 5203 98.2 0.15173 0.15091 0.15 0.1672 0.1667 RANDOM 15.759
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.52 -0.26 -0.52 0.79
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.669 r_sphericity_free 23.14 r_dihedral_angle_4_deg 14.167 r_sphericity_bonded 11.462 r_dihedral_angle_3_deg 11.088 r_dihedral_angle_1_deg 5.892 r_rigid_bond_restr 1.405 r_angle_refined_deg 1.125 r_chiral_restr 0.08 r_bond_refined_d 0.007
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.669 r_sphericity_free 23.14 r_dihedral_angle_4_deg 14.167 r_sphericity_bonded 11.462 r_dihedral_angle_3_deg 11.088 r_dihedral_angle_1_deg 5.892 r_rigid_bond_restr 1.405 r_angle_refined_deg 1.125 r_chiral_restr 0.08 r_bond_refined_d 0.007 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_scbond_it r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2581 Nucleic Acid Atoms Solvent Atoms 300 Heterogen Atoms 174
Software Software Software Name Purpose HKL-2000 data collection PHASER phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling