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Human N-myristoyltransferase isoform 2 (NMT2)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3IU1 PDB ENTRY 3IU1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.5 25% PEG 3350, 0.2M KCL, 100 MM NA CITRATE PH 5.5
Crystal Properties Matthews coefficient Solvent content 2.26 45.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.7 α = 90 b = 72.32 β = 90 c = 114.69 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2011-07-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.33 57 99.9 0.06 15.2 6.3 18414 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.33 2.41 99.9 0.64 2.8 6.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3IU1 2.33 61.17 17427 940 99.77 0.22173 0.21823 0.2213 0.28812 0.2898 RANDOM 54.429
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.12 -1.72 0.6
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.994 r_dihedral_angle_3_deg 19.79 r_dihedral_angle_4_deg 19.078 r_dihedral_angle_1_deg 6.997 r_mcangle_it 6.202 r_scbond_it 4.452 r_mcbond_it 4.248 r_angle_refined_deg 1.672 r_chiral_restr 0.112 r_bond_refined_d 0.013
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.994 r_dihedral_angle_3_deg 19.79 r_dihedral_angle_4_deg 19.078 r_dihedral_angle_1_deg 6.997 r_mcangle_it 6.202 r_scbond_it 4.452 r_mcbond_it 4.248 r_angle_refined_deg 1.672 r_chiral_restr 0.112 r_bond_refined_d 0.013 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3182 Nucleic Acid Atoms Solvent Atoms 68 Heterogen Atoms 65
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling MOLREP phasing