X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1G8JPDB ENTRY 1G8J

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
17.50.1 M HEPES SODIUM PH 7.5, 2% PEG 400, 2.0 M AMMONIUM SULPHATE, 10% GLYCEROL
Crystal Properties
Matthews coefficientSolvent content
2.3447.01

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 149.13α = 90
b = 232.96β = 90
c = 141.87γ = 90
Symmetry
Space GroupP 21 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray70CCDADSC QUANTUM 315rTOROIDAL MIRROR2011-07-11MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID23-1ESRFID23-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.75099.90.1187.2135790
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.72.771000.376.27.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1G8J2.7141.87128907681899.880.194330.193430.21128RANDOM49.985
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.90.290.6
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.408
r_dihedral_angle_4_deg18.757
r_dihedral_angle_3_deg15.16
r_dihedral_angle_1_deg6.217
r_angle_other_deg2.643
r_angle_refined_deg1.393
r_chiral_restr0.074
r_gen_planes_other0.015
r_bond_refined_d0.009
r_gen_planes_refined0.006
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.408
r_dihedral_angle_4_deg18.757
r_dihedral_angle_3_deg15.16
r_dihedral_angle_1_deg6.217
r_angle_other_deg2.643
r_angle_refined_deg1.393
r_chiral_restr0.074
r_gen_planes_other0.015
r_bond_refined_d0.009
r_gen_planes_refined0.006
r_bond_other_d0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_it
r_mcbond_other
r_mcangle_it
r_mcangle_other
r_scbond_it
r_scbond_other
r_scangle_it
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms30160
Nucleic Acid Atoms
Solvent Atoms15
Heterogen Atoms428

Software

Software
Software NamePurpose
REFMACrefinement
xia2data reduction
xia2data scaling
PHASERphasing