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Pseudomonas fluorescens PhoX
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3ZWU PDB ENTRY 3ZWU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.9 19% PEG 6000, 0.1 M TRIS PH 7.9, 0.2 M LICL, 300 UM CACL2
Crystal Properties Matthews coefficient Solvent content 2.4 48.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.82 α = 90 b = 75.98 β = 90 c = 114.97 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M CYLINDRICAL GRAZING INCIDENCE MIRROR 2011-11-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.1 60.3 99.7 0.12 8.1 6.1 252884
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.1 1.12 97.4 0.44 2.3 4.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3ZWU 1.1 60.3 240050 12713 99 0.11836 0.1366 0.1318 0.1174 0.1465 RANDOM 14.32
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.03 0.42 -0.39
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 44.435 r_dihedral_angle_2_deg 33.997 r_sphericity_bonded 20.939 r_dihedral_angle_4_deg 17.977 r_dihedral_angle_3_deg 11.84 r_rigid_bond_restr 10.98 r_dihedral_angle_1_deg 7.446 r_angle_refined_deg 1.082 r_angle_other_deg 0.621 r_chiral_restr 0.078
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 44.435 r_dihedral_angle_2_deg 33.997 r_sphericity_bonded 20.939 r_dihedral_angle_4_deg 17.977 r_dihedral_angle_3_deg 11.84 r_rigid_bond_restr 10.98 r_dihedral_angle_1_deg 7.446 r_angle_refined_deg 1.082 r_angle_other_deg 0.621 r_chiral_restr 0.078 r_gen_planes_refined 0.016 r_gen_planes_other 0.007 r_bond_refined_d 0.006 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4469 Nucleic Acid Atoms Solvent Atoms 898 Heterogen Atoms 47
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling PHASER phasing