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Geotrichum candidum Cel7A structure complex with thio-linked cellotriose at 1.56A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1GPI PDB ENTRY 1GPI
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.9 0.2M MAGNESIUM CHLORIDE HEXAHYDRATE, 20% PEG 3350, pH 5.9
Crystal Properties Matthews coefficient Solvent content 1.78 30.91
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.47 α = 90 b = 80.76 β = 109.6 c = 55.06 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD MIRRORS 2013-11-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.56 51.87 97.8 0.06 10.5 3.9 48793 3.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.56 1.59 97.8 0.22 4 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1GPI 1.56 51.87 46241 2500 97.66 0.15771 0.15626 0.18355 0.1984 RANDOM 13.546
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.36 -0.68 2.08 -0.99
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.54 r_dihedral_angle_4_deg 20.316 r_dihedral_angle_3_deg 10.773 r_dihedral_angle_1_deg 6.237 r_angle_refined_deg 1.178 r_angle_other_deg 0.936 r_mcangle_it 0.887 r_scbond_it 0.57 r_mcbond_it 0.495 r_mcbond_other 0.494
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.54 r_dihedral_angle_4_deg 20.316 r_dihedral_angle_3_deg 10.773 r_dihedral_angle_1_deg 6.237 r_angle_refined_deg 1.178 r_angle_other_deg 0.936 r_mcangle_it 0.887 r_scbond_it 0.57 r_mcbond_it 0.495 r_mcbond_other 0.494 r_chiral_restr 0.099 r_bond_refined_d 0.005 r_gen_planes_refined 0.004 r_bond_other_d 0.003 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3234 Nucleic Acid Atoms Solvent Atoms 396 Heterogen Atoms 172
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling CCP4 phasing