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Ebola virus nucleoprotein bound to VP35 chaperoning peptide P212121
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4ZTA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.4 277 2.0 M sodium formate, 100 mM sodium acetate pH 4.4
Crystal Properties Matthews coefficient Solvent content 2.98 58.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 94.881 α = 90 b = 94.951 β = 90 c = 112.106 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2014-04-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-B 1.03318 APS 23-ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 48.27 100 0.151 0.06 0.993 8.2 7.4 40325
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.49 99.8 1.556 0.607 0.575 1.5 7.5 4154
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4ZTA 2.4 48.27 38215 2050 99.9 0.1946 0.1918 0.1917 0.247 0.2415 RANDOM 64.962
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.25 1.96 1.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.388 r_dihedral_angle_4_deg 15.87 r_dihedral_angle_3_deg 15.482 r_mcangle_it 6.339 r_dihedral_angle_1_deg 4.416 r_mcbond_it 4.359 r_mcbond_other 4.356 r_angle_other_deg 3.701 r_angle_refined_deg 1.482 r_chiral_restr 0.091
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.388 r_dihedral_angle_4_deg 15.87 r_dihedral_angle_3_deg 15.482 r_mcangle_it 6.339 r_dihedral_angle_1_deg 4.416 r_mcbond_it 4.359 r_mcbond_other 4.356 r_angle_other_deg 3.701 r_angle_refined_deg 1.482 r_chiral_restr 0.091 r_bond_refined_d 0.014 r_gen_planes_other 0.009 r_gen_planes_refined 0.006 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5280 Nucleic Acid Atoms Solvent Atoms 223 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction Aimless data scaling PHASER phasing PDB_EXTRACT data extraction XDS data reduction