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Crystal structure of DOX-P Reductoisomerase in complex with magnesium
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 291 0.1 M sodium citrate pH 5.2, 0.15 sodium/potassium tartrate 1.6 M ammonium sulphate
Crystal Properties Matthews coefficient Solvent content 4 69.29
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 133.21 α = 90 b = 133.21 β = 90 c = 77.51 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2012-02-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.9173 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.98 44.4 99.3 8.3 6.4 93623
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.98 44.4 88894 4702 99.14 0.17203 0.17082 0.1824 0.19513 0.2057 RANDOM 39.269
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.77 -0.77 1.54
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.347 r_dihedral_angle_4_deg 25.506 r_dihedral_angle_3_deg 14.122 r_long_range_B_refined 7.521 r_long_range_B_other 7.498 r_dihedral_angle_1_deg 5.855 r_scangle_other 4.618 r_scbond_other 3.553 r_scbond_it 3.552 r_mcangle_other 2.86
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.347 r_dihedral_angle_4_deg 25.506 r_dihedral_angle_3_deg 14.122 r_long_range_B_refined 7.521 r_long_range_B_other 7.498 r_dihedral_angle_1_deg 5.855 r_scangle_other 4.618 r_scbond_other 3.553 r_scbond_it 3.552 r_mcangle_other 2.86 r_mcangle_it 2.859 r_mcbond_other 1.952 r_mcbond_it 1.951 r_angle_refined_deg 1.882 r_angle_other_deg 1.166 r_chiral_restr 0.117 r_bond_refined_d 0.02 r_gen_planes_refined 0.01 r_bond_other_d 0.006 r_gen_planes_other 0.004 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5969 Nucleic Acid Atoms Solvent Atoms 378 Heterogen Atoms 75
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling PHASER phasing