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crystal structure of Giardia 14-3-3 in complex with the phosphopeptide A8Ap
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4F7R
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 294 PEG 5000 MME 25% w/v, Lithium acetate 0.2 M
Crystal Properties Matthews coefficient Solvent content 2.72 54.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.958 α = 90 b = 109.408 β = 92.64 c = 78.568 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2013-06-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.932 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.1 48.01 99.9 0.145 0.069 0.997 10.3 5.2 21585
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.1 3.31 100 0.913 0.437 0.712 2 5.3 3902
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4F7R 3.1 48.01 20475 1093 99.89 0.2066 0.2033 0.2049 0.2657 0.2643 RANDOM 79.773
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.35 0.77 2.9 -1.62
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.55 r_dihedral_angle_3_deg 16.146 r_dihedral_angle_4_deg 13.655 r_dihedral_angle_1_deg 5.414 r_mcangle_it 4.845 r_angle_other_deg 3.597 r_mcbond_it 3.002 r_mcbond_other 3.002 r_angle_refined_deg 1.187 r_chiral_restr 0.063
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.55 r_dihedral_angle_3_deg 16.146 r_dihedral_angle_4_deg 13.655 r_dihedral_angle_1_deg 5.414 r_mcangle_it 4.845 r_angle_other_deg 3.597 r_mcbond_it 3.002 r_mcbond_other 3.002 r_angle_refined_deg 1.187 r_chiral_restr 0.063 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_gen_planes_other 0.003 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7703 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement Aimless data scaling MOLREP phasing PDB_EXTRACT data extraction XDS data reduction XDS data scaling