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RORgamma in complex with inverse agonist 4j.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3BOW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 298 0.1M TRIS pH 8.0, 1.8M Na formate
Crystal Properties Matthews coefficient Solvent content 3.53 65.15
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 99.422 α = 90 b = 99.422 β = 90 c = 129.439 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2014-10-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.9793 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.27 19.791 99.7 0.146 0.146 7.4 5.9 65964
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.27 2.39 100 0.855 0.855 0.8 5.8 9694
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3BOW 2.27 19.79 62513 3396 99.84 0.2023 0.2003 0.1975 0.2397 0.2319 RANDOM 41.14
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.5 0.5 -1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.245 r_dihedral_angle_4_deg 19.692 r_dihedral_angle_3_deg 18.465 r_dihedral_angle_1_deg 6.811 r_mcangle_it 5.549 r_mcbond_it 4.039 r_mcbond_other 4.033 r_angle_refined_deg 2.505 r_angle_other_deg 1.528 r_chiral_restr 0.186
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.245 r_dihedral_angle_4_deg 19.692 r_dihedral_angle_3_deg 18.465 r_dihedral_angle_1_deg 6.811 r_mcangle_it 5.549 r_mcbond_it 4.039 r_mcbond_other 4.033 r_angle_refined_deg 2.505 r_angle_other_deg 1.528 r_chiral_restr 0.186 r_bond_refined_d 0.037 r_gen_planes_refined 0.015 r_bond_other_d 0.007 r_gen_planes_other 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7053 Nucleic Acid Atoms Solvent Atoms 48 Heterogen Atoms 144
Software Software Software Name Purpose REFMAC refinement SCALA data scaling PDB_EXTRACT data extraction HKL-2000 data reduction MOLREP phasing