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Crystal structure of Dln1 complexed with sucrose
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 289 8% (w/v) PEG 6000, 0.1M HEPES 7.0, 1.0M LiCl
Crystal Properties Matthews coefficient Solvent content 2.8 56.06
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.642 α = 90 b = 95.169 β = 90 c = 148.921 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2013-11-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U 0.97907 SSRF BL17U
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.86 50 97.7 0.085 15.8 6.2 67908
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.86 1.93 95 0.496 3.3 5.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.86 35.66 64362 3428 97.56 0.19091 0.18907 0.1972 0.22518 0.2333 RANDOM 35.054
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.51 -0.92 1.43
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.154 r_dihedral_angle_3_deg 13.37 r_dihedral_angle_4_deg 12.953 r_long_range_B_refined 7.373 r_dihedral_angle_1_deg 7.136 r_long_range_B_other 7.101 r_scangle_other 4.337 r_mcangle_it 3.461 r_mcangle_other 3.46 r_scbond_it 2.696
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.154 r_dihedral_angle_3_deg 13.37 r_dihedral_angle_4_deg 12.953 r_long_range_B_refined 7.373 r_dihedral_angle_1_deg 7.136 r_long_range_B_other 7.101 r_scangle_other 4.337 r_mcangle_it 3.461 r_mcangle_other 3.46 r_scbond_it 2.696 r_scbond_other 2.696 r_mcbond_it 2.215 r_mcbond_other 2.213 r_angle_refined_deg 1.459 r_angle_other_deg 0.708 r_chiral_restr 0.086 r_bond_refined_d 0.01 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4864 Nucleic Acid Atoms Solvent Atoms 666 Heterogen Atoms 63
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-3000 data scaling MOLREP phasing