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Crystal structure of the PmFTN variant E130A soaked in iron (5 min)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4ZLW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 298 Sodiaum acetate pH 5.5, Ammonium sulfate, NaCl
Crystal Properties Matthews coefficient Solvent content 2.99 58.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 174.98 α = 90 b = 174.98 β = 90 c = 174.98 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2011-01-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL7-1 1 SSRL BL7-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 48.53 100 0.11 0.118 0.031 16.8 14.3 139649 139649
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2 100 1.124 1.124 0.321 0.7 14 20262
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4ZLW 1.9 48.53 132592 7018 99.95 0.1707 0.1687 0.2076 0.2006 RANDOM 30.999
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.301 r_dihedral_angle_4_deg 19.365 r_dihedral_angle_3_deg 14.391 r_dihedral_angle_1_deg 5.246 r_mcangle_it 3.611 r_mcbond_it 2.71 r_mcbond_other 2.702 r_angle_refined_deg 1.804 r_angle_other_deg 0.942 r_chiral_restr 0.117
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.301 r_dihedral_angle_4_deg 19.365 r_dihedral_angle_3_deg 14.391 r_dihedral_angle_1_deg 5.246 r_mcangle_it 3.611 r_mcbond_it 2.71 r_mcbond_other 2.702 r_angle_refined_deg 1.804 r_angle_other_deg 0.942 r_chiral_restr 0.117 r_bond_refined_d 0.019 r_gen_planes_refined 0.009 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9975 Nucleic Acid Atoms Solvent Atoms 881 Heterogen Atoms 7
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction