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Crystal structure of the PmFTN variant E130A soaked in iron (overnight)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4ZKH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 298 Sodiaum acetate pH 5.5, Ammonium sulfate, NaCl
Crystal Properties Matthews coefficient Solvent content 2.99 58.92
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 175.051 α = 90 b = 175.051 β = 90 c = 175.051 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2011-01-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL7-1 1 SSRL BL7-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 48.55 100 0.107 0.115 0.031 14.9 13.9 120022 120022
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.11 100 1.135 1.135 0.33 0.7 13.7 17380
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4ZKH 2 48.55 113996 6015 99.93 0.1886 0.1866 0.1934 0.2274 0.2294 RANDOM 40.874
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.956 r_dihedral_angle_4_deg 19.241 r_dihedral_angle_3_deg 14.836 r_dihedral_angle_1_deg 5.261 r_mcangle_it 4.511 r_mcbond_it 3.411 r_mcbond_other 3.409 r_angle_refined_deg 1.799 r_angle_other_deg 0.887 r_chiral_restr 0.108
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.956 r_dihedral_angle_4_deg 19.241 r_dihedral_angle_3_deg 14.836 r_dihedral_angle_1_deg 5.261 r_mcangle_it 4.511 r_mcbond_it 3.411 r_mcbond_other 3.409 r_angle_refined_deg 1.799 r_angle_other_deg 0.887 r_chiral_restr 0.108 r_bond_refined_d 0.019 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9927 Nucleic Acid Atoms Solvent Atoms 510 Heterogen Atoms 37
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction