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Cellobionic acid phosphorylase - ligand free structure
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 298 sodium citrate, Li2SO4, 0.6 M (NH3)2SO4, glycerol
Crystal Properties Matthews coefficient Solvent content 3.47 64.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 106.934 α = 90 b = 106.934 β = 90 c = 185.345 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 270 2013-05-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-17A 0.9988 Photon Factory BL-17A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 50 99.5 0.112 17.6 7.3 72225
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.14 100 0.73 2.6 7.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.1 41.44 63592 3385 92.79 0.17258 0.17012 0.183 0.21936 0.2283 RANDOM 30.548
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.604 r_dihedral_angle_4_deg 16.745 r_dihedral_angle_3_deg 14.286 r_dihedral_angle_1_deg 6.963 r_long_range_B_refined 6.487 r_long_range_B_other 6.487 r_scangle_other 5.154 r_scbond_it 3.468 r_scbond_other 3.467 r_mcangle_it 3.385
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.604 r_dihedral_angle_4_deg 16.745 r_dihedral_angle_3_deg 14.286 r_dihedral_angle_1_deg 6.963 r_long_range_B_refined 6.487 r_long_range_B_other 6.487 r_scangle_other 5.154 r_scbond_it 3.468 r_scbond_other 3.467 r_mcangle_it 3.385 r_mcangle_other 3.384 r_mcbond_it 2.496 r_mcbond_other 2.49 r_angle_refined_deg 1.917 r_angle_other_deg 1.068 r_chiral_restr 0.121 r_bond_refined_d 0.02 r_gen_planes_refined 0.01 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6224 Nucleic Acid Atoms Solvent Atoms 477 Heterogen Atoms 49
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHENIX phasing Coot model building