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Crystal structure of the PmFTN variant E44Q soaked in iron (45 min)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4ZKH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 298 Sodiaum acetate pH 5.5, Ammonium sulfate, NaCl
Crystal Properties Matthews coefficient Solvent content 2.96 58.48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 174.92 α = 90 b = 174.92 β = 90 c = 174.92 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2013-07-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL7-1 1 SSRL BL7-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 48.51 100 0.082 0.088 0.023 20.1 14 163899 163899
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.9 100 0.868 0.868 0.264 0.9 12.4 23794
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4ZKH 1.8 48.51 155671 8228 99.97 0.1714 0.1696 0.1791 0.2046 0.2116 RANDOM 28.135
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.253 r_dihedral_angle_4_deg 18.294 r_dihedral_angle_3_deg 14.391 r_dihedral_angle_1_deg 5.165 r_mcangle_it 3.349 r_mcbond_it 2.545 r_mcbond_other 2.545 r_angle_refined_deg 1.868 r_angle_other_deg 0.962 r_chiral_restr 0.122
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.253 r_dihedral_angle_4_deg 18.294 r_dihedral_angle_3_deg 14.391 r_dihedral_angle_1_deg 5.165 r_mcangle_it 3.349 r_mcbond_it 2.545 r_mcbond_other 2.545 r_angle_refined_deg 1.868 r_angle_other_deg 0.962 r_chiral_restr 0.122 r_bond_refined_d 0.021 r_gen_planes_refined 0.01 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10027 Nucleic Acid Atoms Solvent Atoms 902 Heterogen Atoms 16
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction