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The crystal structure of Arabidopsis ferredoxin 2 with 2Fe-2S cluster
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 294 0.2 M MgCl2, 0.1 M Tris, 20 % PEG 8000
Crystal Properties Matthews coefficient Solvent content 3.45 64.33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.73 α = 90 b = 60.73 β = 90 c = 154.73 γ = 90
Symmetry Space Group P 42 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2014-07-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 1.74 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.34 60.73 99.4 0.066 23.2 12.3 12894
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.34 2.4 98.4 0.598 4.2 11.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.34 60.73 12221 627 99.45 0.19831 0.1974 0.2105 0.21582 0.2171 RANDOM 59.545
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.75 2.75 -5.5
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.298 r_dihedral_angle_3_deg 14.918 r_long_range_B_other 9.825 r_long_range_B_refined 9.824 r_scangle_other 8.298 r_dihedral_angle_1_deg 7.288 r_dihedral_angle_4_deg 5.922 r_scbond_it 5.685 r_scbond_other 5.624 r_mcangle_it 4.741
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.298 r_dihedral_angle_3_deg 14.918 r_long_range_B_other 9.825 r_long_range_B_refined 9.824 r_scangle_other 8.298 r_dihedral_angle_1_deg 7.288 r_dihedral_angle_4_deg 5.922 r_scbond_it 5.685 r_scbond_other 5.624 r_mcangle_it 4.741 r_mcangle_other 4.738 r_mcbond_it 3.602 r_mcbond_other 3.584 r_angle_refined_deg 1.933 r_angle_other_deg 0.912 r_chiral_restr 0.115 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1440 Nucleic Acid Atoms Solvent Atoms 38 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing