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Factor Xa complex with GTC000006
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1EZQ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 16-20% PEG 6K, 50 mM Mes=NaOH pH 5.7-6.0, 5 mM CaCl2 and 50 mM NaCl
Crystal Properties Matthews coefficient Solvent content 1.9 35.34
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.663 α = 90 b = 72.781 β = 90 c = 80.454 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2001-02-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX9.6 SRS PX9.6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 30 92.3 0.116 7.9 3.2 29515
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.86 63.4 0.683 1991
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1ezq 1.8 20 29528 1568 100 0.2089 0.2065 0.2074 0.2553 0.2564 RANDOM 27.687
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.09 -2.3 0.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.185 r_dihedral_angle_4_deg 16.886 r_dihedral_angle_3_deg 10.25 r_scangle_it 3.889 r_dihedral_angle_1_deg 3.426 r_scbond_it 2.421 r_mcangle_it 1.894 r_angle_refined_deg 1.337 r_mcbond_it 0.98 r_chiral_restr 0.096
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.185 r_dihedral_angle_4_deg 16.886 r_dihedral_angle_3_deg 10.25 r_scangle_it 3.889 r_dihedral_angle_1_deg 3.426 r_scbond_it 2.421 r_mcangle_it 1.894 r_angle_refined_deg 1.337 r_mcbond_it 0.98 r_chiral_restr 0.096 r_bond_refined_d 0.011 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2226 Nucleic Acid Atoms Solvent Atoms 271 Heterogen Atoms 37
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction REFMAC phasing