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The Crystal Structure of the Ferredoxin Receptor FusA from Pectobacterium atrosepticum SCRI1043
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 289 11-14 % PVP, 14 % PEG 2000 MME, 0.1 Tris, 0.05 M MgCl2 pH 7.5, with a FusA concentration of 15 mg.ml-1 in 50 mM Tris, 200 mM NaCl, 0.8-1 % (v/v) beta-OG, 0.4 % LDAO pH 7.9, at 289 K
Crystal Properties Matthews coefficient Solvent content 3.87 68.23
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 137.274 α = 90 b = 79.886 β = 90.71 c = 137.905 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2014-07-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 0.9765 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.2 48.95 100 0.305 7 6.6 49734
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.2 3.31 100 1.73 1.3 6.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 3.2 48.95 47173 2511 99.88 0.221 0.21834 0.2221 0.271 0.2704 RANDOM 81.354
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.02 -0.13 4.16 -2.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.556 r_dihedral_angle_3_deg 19.156 r_dihedral_angle_4_deg 15.905 r_dihedral_angle_1_deg 8.696 r_long_range_B_other 8.323 r_long_range_B_refined 8.321 r_scangle_other 5.636 r_mcangle_it 4.937 r_mcangle_other 4.937 r_scbond_it 3.394
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.556 r_dihedral_angle_3_deg 19.156 r_dihedral_angle_4_deg 15.905 r_dihedral_angle_1_deg 8.696 r_long_range_B_other 8.323 r_long_range_B_refined 8.321 r_scangle_other 5.636 r_mcangle_it 4.937 r_mcangle_other 4.937 r_scbond_it 3.394 r_scbond_other 3.388 r_mcbond_it 3.009 r_mcbond_other 3.006 r_angle_refined_deg 1.598 r_angle_other_deg 1.041 r_chiral_restr 0.091 r_bond_refined_d 0.011 r_bond_other_d 0.007 r_gen_planes_refined 0.006 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 12900 Nucleic Acid Atoms Solvent Atoms 2 Heterogen Atoms 112
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing