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Crystal structure of TTK kinase domain in complex with a pyrazolopyrimidine inhibitor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 293 0.2 M MgCl2, 0.1M Tris pH 8.5, 25% PEG 3500
Crystal Properties Matthews coefficient Solvent content 3.23 61.94
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.311 α = 90 b = 106.693 β = 90 c = 111.86 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2013-02-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 1.000 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 60 98.9 0.0377 22.37 6.35 18900
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.4 95.6 0.4464 2.64 6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.33 59.53 17387 940 99.27 0.21197 0.20935 0.212 0.26289 0.2584 RANDOM 66.242
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.32 0.15 0.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 44.578 r_dihedral_angle_4_deg 27.569 r_dihedral_angle_3_deg 17.951 r_long_range_B_refined 11.553 r_long_range_B_other 11.551 r_scangle_other 8.917 r_mcangle_other 8.307 r_mcangle_it 8.304 r_dihedral_angle_1_deg 6.849 r_scbond_it 5.989
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 44.578 r_dihedral_angle_4_deg 27.569 r_dihedral_angle_3_deg 17.951 r_long_range_B_refined 11.553 r_long_range_B_other 11.551 r_scangle_other 8.917 r_mcangle_other 8.307 r_mcangle_it 8.304 r_dihedral_angle_1_deg 6.849 r_scbond_it 5.989 r_scbond_other 5.987 r_mcbond_it 5.858 r_mcbond_other 5.852 r_angle_refined_deg 1.64 r_angle_other_deg 0.812 r_chiral_restr 0.096 r_bond_refined_d 0.015 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2124 Nucleic Acid Atoms Solvent Atoms 22 Heterogen Atoms 75
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling