4ZBC

A dehydrated form of glucose isomerase collected at 100K.


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1MNZ 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP72930.1 M Hepes, 10% PEG 400, 0.05 M Manganese Chloride, 20% Glucose
Crystal Properties
Matthews coefficientSolvent content
2.1643.14

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 81.629α = 90
b = 93.641β = 90
c = 97.64γ = 90
Symmetry
Space GroupP 21 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2015-02-09MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I020.9795DiamondI02

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1267.5899.50.04414.43.250965
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
122.199.80.1038.63.3

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1MNZ267.5848454243199.270.137780.135610.18196RANDOM14.877
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.080.04-1.12
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.927
r_dihedral_angle_4_deg15.78
r_dihedral_angle_3_deg12.891
r_long_range_B_refined5.946
r_long_range_B_other5.946
r_dihedral_angle_1_deg5.867
r_scangle_other3.749
r_scbond_it2.41
r_scbond_other2.409
r_angle_refined_deg2.029
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.927
r_dihedral_angle_4_deg15.78
r_dihedral_angle_3_deg12.891
r_long_range_B_refined5.946
r_long_range_B_other5.946
r_dihedral_angle_1_deg5.867
r_scangle_other3.749
r_scbond_it2.41
r_scbond_other2.409
r_angle_refined_deg2.029
r_mcangle_it1.873
r_mcangle_other1.873
r_angle_other_deg1.239
r_mcbond_it1.213
r_mcbond_other1.211
r_chiral_restr0.129
r_bond_refined_d0.018
r_gen_planes_refined0.01
r_bond_other_d0.003
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6090
Nucleic Acid Atoms
Solvent Atoms542
Heterogen Atoms107

Software

Software
Software NamePurpose
REFMACrefinement
xia2data reduction
xia2data scaling
MOLREPphasing