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A dehydrated form of glucose isomerase collected at 100K.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1MNZ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 293 0.1 M Hepes, 10% PEG 400, 0.05 M Manganese Chloride, 20% Glucose
Crystal Properties Matthews coefficient Solvent content 2.16 43.14
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.629 α = 90 b = 93.641 β = 90 c = 97.64 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2015-02-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 0.9795 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 67.58 99.5 0.044 14.4 3.2 50965
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.1 99.8 0.103 8.6 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1MNZ 2 67.58 48454 2431 99.27 0.13778 0.13561 0.15 0.18196 0.1927 RANDOM 14.877
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.08 0.04 -1.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.927 r_dihedral_angle_4_deg 15.78 r_dihedral_angle_3_deg 12.891 r_long_range_B_refined 5.946 r_long_range_B_other 5.946 r_dihedral_angle_1_deg 5.867 r_scangle_other 3.749 r_scbond_it 2.41 r_scbond_other 2.409 r_angle_refined_deg 2.029
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.927 r_dihedral_angle_4_deg 15.78 r_dihedral_angle_3_deg 12.891 r_long_range_B_refined 5.946 r_long_range_B_other 5.946 r_dihedral_angle_1_deg 5.867 r_scangle_other 3.749 r_scbond_it 2.41 r_scbond_other 2.409 r_angle_refined_deg 2.029 r_mcangle_it 1.873 r_mcangle_other 1.873 r_angle_other_deg 1.239 r_mcbond_it 1.213 r_mcbond_other 1.211 r_chiral_restr 0.129 r_bond_refined_d 0.018 r_gen_planes_refined 0.01 r_bond_other_d 0.003 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6090 Nucleic Acid Atoms Solvent Atoms 542 Heterogen Atoms 107
Software Software Software Name Purpose REFMAC refinement xia2 data reduction xia2 data scaling MOLREP phasing