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UbiX in complex with a covalent adduct between dimethylallyl monophosphate and reduced FMN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 297 12% PEG 3350, 150mM sodium thiocyanate, and 100mM Tris pH 7.2
Crystal Properties Matthews coefficient Solvent content 2.67 54.02
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 142.18 α = 90 b = 142.18 β = 90 c = 142.18 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2014-02-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.98 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 50.27 99.6 0.027 16 6.8 44084
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.4 1.44 100 0.297 6.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.4 50.27 44084 2399 99.47 0.09927 0.09769 0.0974 0.129 0.1281 RANDOM 18.274
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.224 r_sphericity_free 27.389 r_dihedral_angle_4_deg 17.012 r_sphericity_bonded 13.846 r_dihedral_angle_3_deg 10.484 r_long_range_B_refined 6.557 r_long_range_B_other 6.557 r_dihedral_angle_1_deg 6.137 r_rigid_bond_restr 5.487 r_scangle_other 4.895
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.224 r_sphericity_free 27.389 r_dihedral_angle_4_deg 17.012 r_sphericity_bonded 13.846 r_dihedral_angle_3_deg 10.484 r_long_range_B_refined 6.557 r_long_range_B_other 6.557 r_dihedral_angle_1_deg 6.137 r_rigid_bond_restr 5.487 r_scangle_other 4.895 r_scbond_it 4.196 r_scbond_other 4.186 r_mcangle_it 2.745 r_mcangle_other 2.744 r_mcbond_other 2.287 r_mcbond_it 2.282 r_angle_refined_deg 1.983 r_angle_other_deg 1.067 r_chiral_restr 0.489 r_bond_refined_d 0.026 r_gen_planes_refined 0.013 r_bond_other_d 0.006 r_gen_planes_other 0.004 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1549 Nucleic Acid Atoms Solvent Atoms 194 Heterogen Atoms 54
Software Software Software Name Purpose REFMAC refinement xia2 data reduction xia2 data scaling REFMAC phasing