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Structure of UbiX Y169F in complex with oxidised FMN and dimethylallyl monophosphate
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 297 12% PEG 3350, 150mM sodium thiocyanate and 100mM Tris pH 7.2
Crystal Properties Matthews coefficient Solvent content 2.65 53.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 141.73 α = 90 b = 141.73 β = 90 c = 141.73 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2014-08-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.98 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.76 70.86 99.9 0.026 19.3 6.7 22355
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.76 1.81 100 0.36 2.4 6.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.76 70.86 22355 1074 99.9 0.14423 0.14243 0.1566 0.18197 0.1907 RANDOM 26.668
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.004 r_dihedral_angle_4_deg 18.924 r_dihedral_angle_1_deg 12.482 r_dihedral_angle_3_deg 12.439 r_long_range_B_refined 7.913 r_long_range_B_other 7.912 r_scangle_other 5.644 r_scbond_other 3.799 r_scbond_it 3.795 r_mcangle_it 3.447
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.004 r_dihedral_angle_4_deg 18.924 r_dihedral_angle_1_deg 12.482 r_dihedral_angle_3_deg 12.439 r_long_range_B_refined 7.913 r_long_range_B_other 7.912 r_scangle_other 5.644 r_scbond_other 3.799 r_scbond_it 3.795 r_mcangle_it 3.447 r_mcangle_other 3.447 r_mcbond_it 2.531 r_mcbond_other 2.531 r_angle_refined_deg 2.407 r_angle_other_deg 1.181 r_chiral_restr 0.303 r_bond_refined_d 0.022 r_gen_planes_refined 0.015 r_bond_other_d 0.003 r_gen_planes_other 0.003 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1545 Nucleic Acid Atoms Solvent Atoms 116 Heterogen Atoms 48
Software Software Software Name Purpose REFMAC refinement xia2 data reduction xia2 data scaling REFMAC phasing