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Structure of A. niger Fdc1 in complex with alpha-fluoro cinnamic acid
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4ZA4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 277 0.2 M potassium thiocyanate, Bis-Tris propane 6.5, 20 % w/v PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.4 48.72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 95.91 α = 90 b = 64.2 β = 90 c = 87.79 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2014-08-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.98 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.16 32.28 98.7 12 4.2 175535
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.16 1.19 99.9 0.361 2.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4ZA4 1.16 32.28 175535 9183 99.96 0.14661 0.14623 0.1501 0.15388 0.1589 RANDOM 9.837
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.17 -0.43 0.26
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.954 r_dihedral_angle_4_deg 20.674 r_dihedral_angle_3_deg 12.201 r_mcbond_other 7.523 r_scangle_it 6.727 r_dihedral_angle_1_deg 6.435 r_rigid_bond_restr 5.203 r_scbond_it 5.138 r_angle_other_deg 4.466 r_mcangle_it 3.329
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.954 r_dihedral_angle_4_deg 20.674 r_dihedral_angle_3_deg 12.201 r_mcbond_other 7.523 r_scangle_it 6.727 r_dihedral_angle_1_deg 6.435 r_rigid_bond_restr 5.203 r_scbond_it 5.138 r_angle_other_deg 4.466 r_mcangle_it 3.329 r_angle_refined_deg 2.622 r_mcbond_it 2.493 r_chiral_restr 0.2 r_bond_refined_d 0.031 r_gen_planes_other 0.026 r_gen_planes_refined 0.019 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3843 Nucleic Acid Atoms Solvent Atoms 485 Heterogen Atoms 87
Software Software Software Name Purpose REFMAC refinement xia2 data reduction xia2 data scaling PHASER phasing