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Structure of A. niger Fdc1 in complex with 4-vinyl guaiacol
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 277 0.2 M potassium thiocyanate, Bis-Tris propane 6.5, 20 % w/v PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.43 49.35
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 96.592 α = 90 b = 64.467 β = 90 c = 87.885 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2015-02-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I24 0.98 Diamond I24
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.242 94.19 98.9 0.031 11.5 6.5 146799
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.242 1.274 94.4 0.344 2 6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.242 94.19 146799 7752 99.83 0.14445 0.14346 0.1448 0.16319 0.163 RANDOM 11.068
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.2 -2.48 1.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.954 r_dihedral_angle_4_deg 20.558 r_dihedral_angle_3_deg 12.154 r_mcbond_other 7.956 r_scangle_it 6.487 r_dihedral_angle_1_deg 6.464 r_rigid_bond_restr 5.277 r_scbond_it 4.859 r_angle_other_deg 4.401 r_mcangle_it 3.164
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.954 r_dihedral_angle_4_deg 20.558 r_dihedral_angle_3_deg 12.154 r_mcbond_other 7.956 r_scangle_it 6.487 r_dihedral_angle_1_deg 6.464 r_rigid_bond_restr 5.277 r_scbond_it 4.859 r_angle_other_deg 4.401 r_mcangle_it 3.164 r_mcbond_it 2.374 r_angle_refined_deg 2.304 r_chiral_restr 0.171 r_bond_refined_d 0.026 r_gen_planes_other 0.022 r_gen_planes_refined 0.016 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3815 Nucleic Acid Atoms Solvent Atoms 467 Heterogen Atoms 100
Software Software Software Name Purpose REFMAC refinement xia2 data reduction xia2 data scaling PHASER phasing