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Novel Inhibitors of Bacterial Methionine Aminopeptidase with Broad-Spectrum Biochemical Activity
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.8 100 mM MES, 1.1 M ammonium sulfate, 0.1 M potassium chloride, 9% trehalose
Crystal Properties Matthews coefficient Solvent content 2.45 49.71
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.985 α = 90 b = 62.712 β = 89.59 c = 72.978 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2014-06-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-B 1.000 APS 23-ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.43 47.57 92.1 4.3 6 71302
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.43 47.57 67700 3601 69.57 0.2539 0.2511 0.2593 0.3055 0.3119 RANDOM 32.034
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.25 1.14 -3.26 1.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.883 r_dihedral_angle_4_deg 17.992 r_dihedral_angle_3_deg 14.592 r_dihedral_angle_1_deg 6.773 r_mcangle_it 3.011 r_mcbond_it 2.279 r_mcbond_other 2.279 r_angle_refined_deg 1.863 r_angle_other_deg 1.046 r_chiral_restr 0.107
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.883 r_dihedral_angle_4_deg 17.992 r_dihedral_angle_3_deg 14.592 r_dihedral_angle_1_deg 6.773 r_mcangle_it 3.011 r_mcbond_it 2.279 r_mcbond_other 2.279 r_angle_refined_deg 1.863 r_angle_other_deg 1.046 r_chiral_restr 0.107 r_bond_refined_d 0.017 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4052 Nucleic Acid Atoms Solvent Atoms 387 Heterogen Atoms 66
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction d*TREK data reduction SCALA data scaling AMoRE phasing