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Crystal structure of GFP-TAX1BP1 UBZ1+2 domain fusion protein
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1EMA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 293 0.2 M Lithium sulfate monohydrate, 0.1 M Tris pH 8.5, 25% w/v PEG 3350.
Crystal Properties Matthews coefficient Solvent content 2.27 45.93
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.885 α = 90 b = 83.334 β = 90 c = 128.496 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2009-06-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A 0.999 Photon Factory AR-NW12A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 50 99.64 4.6 6.6 14819
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1EMA 2.8 50 14819 774 99.64 0.20966 0.20596 0.2046 0.27968 0.2808 RANDOM 44.733
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.55 -0.46 -1.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.594 r_dihedral_angle_3_deg 20.129 r_dihedral_angle_4_deg 13.337 r_dihedral_angle_1_deg 7.15 r_long_range_B_refined 5.345 r_long_range_B_other 5.339 r_angle_other_deg 3.606 r_scangle_other 3.231 r_mcangle_it 3.147 r_mcangle_other 3.146
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.594 r_dihedral_angle_3_deg 20.129 r_dihedral_angle_4_deg 13.337 r_dihedral_angle_1_deg 7.15 r_long_range_B_refined 5.345 r_long_range_B_other 5.339 r_angle_other_deg 3.606 r_scangle_other 3.231 r_mcangle_it 3.147 r_mcangle_other 3.146 r_scbond_it 1.867 r_scbond_other 1.867 r_mcbond_it 1.847 r_mcbond_other 1.846 r_angle_refined_deg 1.701 r_chiral_restr 0.088 r_bond_refined_d 0.012 r_gen_planes_other 0.01 r_gen_planes_refined 0.008 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4580 Nucleic Acid Atoms Solvent Atoms 58 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing