☰ Navigation Tabs
Crystal structure of methyltransferase CalO6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.8 294 Reservoir: 0.1 M NaCl, 0.1 M Bis-Tris (pH 5.8), and 1.10-1.25 M ammonium sulfate
Crystal Properties Matthews coefficient Solvent content 2.13 42.37
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 126.828 α = 90 b = 126.828 β = 90 c = 105.659 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2003-10-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X12C 1.007 NSLS X12C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.1 50 98.07 28 3.4 11759
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 3.4 25 4328 204 98.07 0.32502 0.32458 0.3341 0.33338 0.3545 RANDOM 110.344
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.57 2.29 4.57 -14.83
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.933 r_dihedral_angle_3_deg 21.067 r_dihedral_angle_4_deg 18.373 r_dihedral_angle_1_deg 9.534 r_long_range_B_refined 4.933 r_long_range_B_other 4.933 r_mcangle_other 2.342 r_mcangle_it 2.34 r_scangle_other 1.714 r_angle_refined_deg 1.444
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.933 r_dihedral_angle_3_deg 21.067 r_dihedral_angle_4_deg 18.373 r_dihedral_angle_1_deg 9.534 r_long_range_B_refined 4.933 r_long_range_B_other 4.933 r_mcangle_other 2.342 r_mcangle_it 2.34 r_scangle_other 1.714 r_angle_refined_deg 1.444 r_mcbond_it 1.293 r_mcbond_other 1.273 r_angle_other_deg 1.057 r_scbond_it 0.874 r_scbond_other 0.874 r_chiral_restr 0.079 r_bond_refined_d 0.009 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2188 Nucleic Acid Atoms Solvent Atoms 4 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHENIX phasing