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Crystal Structure of the CW domain of ZCWPW2 mutant F78R in complex with histone H3 peptide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4O62 PDB entry 4O62
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 2 M ammonium sulfate, 2% PEG400, 0.1 M HEPES sodium
Crystal Properties Matthews coefficient Solvent content 4.5 72.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 126.659 α = 90 b = 126.659 β = 90 c = 63.271 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2014-06-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9786 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 41.442 99.4 0.073 0.035 0.998 14.3 5.5 37974
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.78 100 1.039 0.481 0.665 1.5 5.7 2114
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT PDB entry 4O62 1.75 41.442 1580 99.38 0.1777 0.1771 0.1918 0.1922 0.206 THIN SHELLS (SFTOOLS) 33.923
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.56 -0.28 -0.56 1.8
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.305 r_dihedral_angle_4_deg 19.641 r_dihedral_angle_3_deg 10.59 r_dihedral_angle_1_deg 6.231 r_mcangle_it 2.568 r_mcbond_it 1.793 r_mcbond_other 1.789 r_angle_refined_deg 1.606 r_angle_other_deg 0.982 r_chiral_restr 0.108
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.305 r_dihedral_angle_4_deg 19.641 r_dihedral_angle_3_deg 10.59 r_dihedral_angle_1_deg 6.231 r_mcangle_it 2.568 r_mcbond_it 1.793 r_mcbond_other 1.789 r_angle_refined_deg 1.606 r_angle_other_deg 0.982 r_chiral_restr 0.108 r_bond_refined_d 0.016 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1483 Nucleic Acid Atoms Solvent Atoms 130 Heterogen Atoms 36
Software Software Software Name Purpose REFMAC refinement Aimless data scaling PDB_EXTRACT data extraction XDS data scaling Coot model building PHASER phasing