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Crystal Structure of Streptococcus pneumoniae NanC, in complex with Oseltamivir.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 293 20% PEG3350, 7.5% Isopropanol, 0.25M Ammonium Sulfate, 0.1M Hepes pH8
Crystal Properties Matthews coefficient Solvent content 2.47 50.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.51 α = 90 b = 136.03 β = 90 c = 150.17 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2011-10-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.918 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.38 50.41 99.9 0.192 6.9 6.3 61138
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.38 2.44 99.9 0.625 2.5 5.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.38 50.41 57972 3096 99.87 0.2185 0.216 0.2213 0.2668 0.2705 RANDOM 21.878
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.19 1.96 -1.77
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.707 r_dihedral_angle_3_deg 14.214 r_dihedral_angle_4_deg 12.719 r_dihedral_angle_1_deg 7.635 r_angle_refined_deg 1.555 r_mcangle_it 1.491 r_angle_other_deg 1.053 r_mcbond_it 0.853 r_mcbond_other 0.853 r_chiral_restr 0.086
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.707 r_dihedral_angle_3_deg 14.214 r_dihedral_angle_4_deg 12.719 r_dihedral_angle_1_deg 7.635 r_angle_refined_deg 1.555 r_mcangle_it 1.491 r_angle_other_deg 1.053 r_mcbond_it 0.853 r_mcbond_other 0.853 r_chiral_restr 0.086 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_bond_other_d 0.004 r_gen_planes_other 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10367 Nucleic Acid Atoms Solvent Atoms 668 Heterogen Atoms 90
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction xia2 data reduction