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Crystal structure of the extracellular receptor domain of the essential sensor kinase WalK from Staphylococcus aureus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.1 289 0.2 M ammonium citrate dibasic, 20% w/v polyethylene glycol 3350, pH 5.1
Crystal Properties Matthews coefficient Solvent content 2.97 58.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.701 α = 90 b = 66.701 β = 90 c = 80.492 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 80 CCD MARMOSAIC 300 mm CCD 2014-04-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-G 0.97856 APS 21-ID-G
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 30 100 41.4 5.7 44089
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.7 30 41930 2124 99.87 0.16632 0.1648 0.1764 0.19667 0.2087 RANDOM 30.709
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.1 0.05 0.1 -0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.508 r_dihedral_angle_4_deg 18.844 r_dihedral_angle_3_deg 14.864 r_long_range_B_refined 9.013 r_long_range_B_other 8.629 r_scangle_other 6.953 r_dihedral_angle_1_deg 6.143 r_scbond_it 4.752 r_scbond_other 4.75 r_mcangle_it 4.107
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.508 r_dihedral_angle_4_deg 18.844 r_dihedral_angle_3_deg 14.864 r_long_range_B_refined 9.013 r_long_range_B_other 8.629 r_scangle_other 6.953 r_dihedral_angle_1_deg 6.143 r_scbond_it 4.752 r_scbond_other 4.75 r_mcangle_it 4.107 r_mcangle_other 4.107 r_mcbond_it 2.88 r_mcbond_other 2.867 r_angle_refined_deg 2.205 r_angle_other_deg 0.972 r_chiral_restr 0.138 r_bond_refined_d 0.024 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2364 Nucleic Acid Atoms Solvent Atoms 386 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling RESOLVE phasing