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The crystal structure of mongoose (Helogale parvula) hemoglobin at pH 8.2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.2 293 25% PEG 3350, 50mM Tris-HCl
Crystal Properties Matthews coefficient Solvent content 3.07 59.95
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.038 α = 90 b = 88.947 β = 115.39 c = 55.6 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate 2012-04-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE BRUKER AXS MICROSTAR 1.5417
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 30 99 13.2 3.7 16749
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.45 29.82 12539 1384 99.65 0.26708 0.26364 0.2629 0.2982 0.2743 RANDOM 28.484
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.1 -0.03 0.01 -0.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.55 r_dihedral_angle_3_deg 21.175 r_dihedral_angle_4_deg 14.665 r_dihedral_angle_1_deg 6.822 r_scangle_it 3.26 r_scbond_it 2.079 r_angle_refined_deg 1.843 r_mcangle_it 1.34 r_mcbond_it 0.728 r_chiral_restr 0.129
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.55 r_dihedral_angle_3_deg 21.175 r_dihedral_angle_4_deg 14.665 r_dihedral_angle_1_deg 6.822 r_scangle_it 3.26 r_scbond_it 2.079 r_angle_refined_deg 1.843 r_mcangle_it 1.34 r_mcbond_it 0.728 r_chiral_restr 0.129 r_bond_refined_d 0.018 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2210 Nucleic Acid Atoms Solvent Atoms 77 Heterogen Atoms 90
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling PHASER phasing