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Structure of coiled-coil domain of SYCP1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 293 ammonium chloride, 0.1 M sodium acetate
Crystal Properties Matthews coefficient Solvent content 4.23 70.95
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 119.606 α = 90 b = 119.606 β = 90 c = 83.572 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD ADSC QUANTUM 315r 2013-09-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 5C (4A) 0.987 PAL/PLS 5C (4A)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 50 97.5 30 7 39027
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2 28.19 38335 1978 97.53 0.23188 0.23062 0.236 0.2561 0.2545 RANDOM 46.135
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02 0.02 -0.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.397 r_dihedral_angle_4_deg 24.718 r_dihedral_angle_3_deg 17.94 r_long_range_B_refined 11.291 r_long_range_B_other 11.273 r_scangle_other 9.798 r_mcangle_it 7.146 r_mcangle_other 7.143 r_scbond_other 6.894 r_scbond_it 6.893
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.397 r_dihedral_angle_4_deg 24.718 r_dihedral_angle_3_deg 17.94 r_long_range_B_refined 11.291 r_long_range_B_other 11.273 r_scangle_other 9.798 r_mcangle_it 7.146 r_mcangle_other 7.143 r_scbond_other 6.894 r_scbond_it 6.893 r_mcbond_it 5.793 r_mcbond_other 5.793 r_dihedral_angle_1_deg 5.253 r_angle_refined_deg 2.365 r_angle_other_deg 1.068 r_chiral_restr 0.162 r_bond_refined_d 0.031 r_gen_planes_refined 0.011 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1561 Nucleic Acid Atoms Solvent Atoms 155 Heterogen Atoms 12
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHENIX phasing