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SeMet-labelled HmdII from Methanocaldococcus jannaschii
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.2 281 35% (v/v) PEG 300 and 100 mM phosphate-citrate buffer
Crystal Properties Matthews coefficient Solvent content 2.09 41.27
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.57 α = 90 b = 77.97 β = 90 c = 153.65 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2013-04-25 M MAD 2 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2013-04-25 M MAD 3 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2013-04-25 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.9791 SLS X10SA 2 SYNCHROTRON SLS BEAMLINE X10SA 0.9798 SLS X10SA 3 SYNCHROTRON SLS BEAMLINE X10SA 0.9720 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 50 99.3 0.078 0.127 11.8 5.3 50381 -3 27.43
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2 95.7 0.586 0.386 2.22 3.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MAD FREE R-VALUE 1.902 43.588 1.36 50301 2556 99.6 0.1864 0.1849 0.1877 0.2151 0.2173 30.8366
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 13.939 f_angle_d 1.193 f_chiral_restr 0.051 f_bond_d 0.008 f_plane_restr 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5200 Nucleic Acid Atoms Solvent Atoms 224 Heterogen Atoms 10
Software Software Software Name Purpose XSCALE data scaling SHARP phasing PHENIX refinement PDB_EXTRACT data extraction XDS data reduction