☰ Navigation Tabs
Crystal structure of the human galectin-4 C-terminal carbohydrate recognition domain in complex with lacto-N-tetraose (LNT)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293.15 1.2 M ammonium sulfate, 0.1 M HEPES pH 7.0, 4 % v/v PEG 400
Crystal Properties Matthews coefficient Solvent content 1.96 37.18
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.189 α = 90 b = 130.67 β = 96.35 c = 45.271 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210r 2013-10-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX1 0.9537 Australian Synchrotron MX1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 44.99 98.6 0.028 0.016 0.999 35.2 4.1 22849
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.38 88.8 0.106 0.071 0.978 10 3.1 2032
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.3 42.54 21708 1113 98.09 0.1738 0.1721 0.1743 0.2079 0.2028 RANDOM 28.378
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.89 -4.07 -1.61 -2.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.481 r_dihedral_angle_3_deg 14.915 r_dihedral_angle_4_deg 14.262 r_dihedral_angle_1_deg 6.687 r_angle_other_deg 2.05 r_mcangle_it 1.82 r_angle_refined_deg 1.366 r_mcbond_it 0.965 r_mcbond_other 0.965 r_chiral_restr 0.107
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.481 r_dihedral_angle_3_deg 14.915 r_dihedral_angle_4_deg 14.262 r_dihedral_angle_1_deg 6.687 r_angle_other_deg 2.05 r_mcangle_it 1.82 r_angle_refined_deg 1.366 r_mcbond_it 0.965 r_mcbond_other 0.965 r_chiral_restr 0.107 r_bond_other_d 0.009 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4353 Nucleic Acid Atoms Solvent Atoms 128 Heterogen Atoms 151
Software Software Software Name Purpose REFMAC refinement Aimless data scaling PDB_EXTRACT data extraction XDS data reduction PHASER phasing