X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2WO6PDB entry 2WO6

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP8.827737% PEG400, 0.2 M lithium sulfate, 0.1 M Tris, pH 8.8
Crystal Properties
Matthews coefficientSolvent content
3.2762.43

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 265.472α = 90
b = 65.528β = 114.6
c = 139.365γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 2M2013-10-31MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I04-10.92000DiamondI04-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.5848.4199.60.06616.66.56884856.1
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.582.7299.90.8842.26.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB entry 2WO62.5848.4165362348499.50.193430.19190.22203RANDOM78.835
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.16-0.54-1.040.96
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.785
r_dihedral_angle_4_deg21.001
r_dihedral_angle_3_deg14.744
r_long_range_B_refined8.552
r_long_range_B_other8.551
r_dihedral_angle_1_deg6.216
r_scangle_other5.729
r_mcangle_it4.799
r_mcangle_other4.799
r_scbond_it3.712
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.785
r_dihedral_angle_4_deg21.001
r_dihedral_angle_3_deg14.744
r_long_range_B_refined8.552
r_long_range_B_other8.551
r_dihedral_angle_1_deg6.216
r_scangle_other5.729
r_mcangle_it4.799
r_mcangle_other4.799
r_scbond_it3.712
r_scbond_other3.712
r_mcbond_it3.034
r_mcbond_other3.034
r_angle_refined_deg1.412
r_angle_other_deg0.853
r_chiral_restr0.065
r_bond_refined_d0.011
r_gen_planes_refined0.007
r_bond_other_d0.005
r_gen_planes_other0.005
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms11342
Nucleic Acid Atoms
Solvent Atoms247
Heterogen Atoms222

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata scaling
SCALAdata scaling
PHASERphasing