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Crystal structure of the CBP bromodomain in complex with CPI098
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 277 0.1M Bis-Tris, pH 6.5
27% PEG3350
0.1M magnesium chloride
Crystal Properties Matthews coefficient Solvent content 2.15 42.84
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 122.7 α = 90 b = 122.7 β = 90 c = 81.17 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2011-07-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D 0.97872 APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 64.504 99.9 0.093 0.105 0.048 7.3 4.7 54790 54790
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.74 100 0.337 0.337 0.177 2.3 4.6 8002
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.65 64.5 52073 2655 99.81 0.2456 0.2444 0.2528 0.2694 0.2734 RANDOM 20.906
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.36 -0.18 -0.36 1.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.043 r_dihedral_angle_4_deg 22.597 r_dihedral_angle_3_deg 13.384 r_dihedral_angle_1_deg 5.54 r_angle_refined_deg 1.716 r_mcangle_it 1.602 r_angle_other_deg 1.544 r_mcbond_it 1.025 r_mcbond_other 1.005 r_chiral_restr 0.103
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.043 r_dihedral_angle_4_deg 22.597 r_dihedral_angle_3_deg 13.384 r_dihedral_angle_1_deg 5.54 r_angle_refined_deg 1.716 r_mcangle_it 1.602 r_angle_other_deg 1.544 r_mcbond_it 1.025 r_mcbond_other 1.005 r_chiral_restr 0.103 r_bond_refined_d 0.015 r_gen_planes_refined 0.012 r_bond_other_d 0.009 r_gen_planes_other 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3467 Nucleic Acid Atoms Solvent Atoms 343 Heterogen Atoms 56
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction DENZO data reduction AMoRE phasing