☰ Navigation Tabs
Carboplatin binding to HEWL in NaBr crystallisation conditions studied at an X-ray wavelength of 0.9163A - new refinement
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4XAN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 BATCH MODE 4.7 297 co-crystallizing 20 mg ml HEWL with 1.4 mg carboplatin in 75 ml DMSO, 462.5 ml 0.1 M sodium acetate, 462.5 ml 1 M NaBr solution.
Crystal Properties Matthews coefficient Solvent content 2.01 38.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.58 α = 90 b = 78.58 β = 90 c = 37.29 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2013-09-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.9163 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.47 55.56 94.6 0.09 0.09 16.3 10.6 18627 17672 4 2 12.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.47 1.5 64 0.46 4.2 8.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 4XAN 1.47 39.29 17672 933 91.01 0.1077 0.1053 0.1053 0.1559 0.1557 RANDOM 14.86
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.1 -0.1 0.2
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.302 r_sphericity_free 25.729 r_dihedral_angle_4_deg 20.293 r_dihedral_angle_3_deg 13.444 r_sphericity_bonded 10.609 r_dihedral_angle_1_deg 5.846 r_angle_other_deg 1.923 r_rigid_bond_restr 1.871 r_mcangle_it 1.51 r_angle_refined_deg 1.494
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.302 r_sphericity_free 25.729 r_dihedral_angle_4_deg 20.293 r_dihedral_angle_3_deg 13.444 r_sphericity_bonded 10.609 r_dihedral_angle_1_deg 5.846 r_angle_other_deg 1.923 r_rigid_bond_restr 1.871 r_mcangle_it 1.51 r_angle_refined_deg 1.494 r_mcbond_it 1.237 r_mcbond_other 1.188 r_chiral_restr 0.113 r_bond_refined_d 0.013 r_gen_planes_refined 0.007 r_gen_planes_other 0.006 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1001 Nucleic Acid Atoms Solvent Atoms 182 Heterogen Atoms 36
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction xia2 data reduction MOSFLM data reduction Aimless data scaling Coot model building PHASER phasing