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Crystal structure of ALiS1-Streptavidin complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 293 0.1M Hepes-NaOH (pH7.0), 50%(v/v) MPD
Crystal Properties Matthews coefficient Solvent content 2.18 43.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.843 α = 90 b = 84.353 β = 98.92 c = 46.156 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2013-01-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL38B1 0.90 SPring-8 BL38B1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.22 50 99.9 0.069 10.3 6.4 129491
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.22 1.24 99.9 0.38 3.2 5.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.22 50 122948 6519 99.74 0.12615 0.12458 0.1266 0.15545 0.1573 RANDOM 15.704
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.7 0.01 0.73 -0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.682 r_sphericity_free 24.261 r_dihedral_angle_4_deg 15.711 r_dihedral_angle_3_deg 12.76 r_sphericity_bonded 9.121 r_dihedral_angle_1_deg 8.817 r_rigid_bond_restr 6.105 r_long_range_B_refined 3.855 r_scangle_other 3.781 r_long_range_B_other 3.749
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.682 r_sphericity_free 24.261 r_dihedral_angle_4_deg 15.711 r_dihedral_angle_3_deg 12.76 r_sphericity_bonded 9.121 r_dihedral_angle_1_deg 8.817 r_rigid_bond_restr 6.105 r_long_range_B_refined 3.855 r_scangle_other 3.781 r_long_range_B_other 3.749 r_scbond_it 3.236 r_scbond_other 3.235 r_mcangle_it 2.845 r_mcangle_other 2.845 r_mcbond_it 2.608 r_mcbond_other 2.608 r_angle_refined_deg 2.343 r_angle_other_deg 1.083 r_chiral_restr 0.14 r_bond_refined_d 0.024 r_gen_planes_refined 0.012 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3616 Nucleic Acid Atoms Solvent Atoms 411 Heterogen Atoms 80
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing