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Bovine beta-lactoglobulin complex with pramocaine crystallized from sodium citrate (BLG-PRM1)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1BSY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 protein 20 mg/ml, 1.34 M sodium citrate in 0.1 M Tris-HCl pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.51 50.94
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.525 α = 90 b = 53.525 β = 90 c = 110.959 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 CCD AGILENT ATLAS CCD 2012-04-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SEALED TUBE Agilent SuperNova 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 13.29 99.1 0.05 10 2.6 12846
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.11 98.5 0.344 1.9 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1bsy 2 13.29 11579 1267 98.81 0.22232 0.21613 0.2218 0.27843 0.2804 RANDOM 38.524
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.666 r_dihedral_angle_3_deg 16.415 r_dihedral_angle_4_deg 11.704 r_dihedral_angle_1_deg 6.876 r_long_range_B_refined 6.443 r_long_range_B_other 6.44 r_scangle_other 4.349 r_mcangle_it 4.116 r_mcangle_other 4.114 r_scbond_it 2.633
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.666 r_dihedral_angle_3_deg 16.415 r_dihedral_angle_4_deg 11.704 r_dihedral_angle_1_deg 6.876 r_long_range_B_refined 6.443 r_long_range_B_other 6.44 r_scangle_other 4.349 r_mcangle_it 4.116 r_mcangle_other 4.114 r_scbond_it 2.633 r_scbond_other 2.631 r_mcbond_other 2.441 r_mcbond_it 2.44 r_angle_refined_deg 1.351 r_angle_other_deg 0.766 r_chiral_restr 0.076 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1244 Nucleic Acid Atoms Solvent Atoms 69 Heterogen Atoms 21
Software Software Software Name Purpose REFMAC refinement CrysalisPro data reduction SCALA data scaling PHASER phasing