☰ Navigation Tabs
beta2 carbohydrate binding module (CBM) of AMP-activated protein kinase (AMPK)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 281.15 0.17 M ammonium sulphate, 15% v/v glycerol and 25.5 % w/v PEG4000
Crystal Properties Matthews coefficient Solvent content 2.21 44.43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 112.973 α = 90 b = 27.627 β = 133.88 c = 78.882 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210r 2013-06-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX1 0.953700 Australian Synchrotron MX1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 40.72 97.6 0.08 17.8 7.5 23221 20.68
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.62 90.7 0.669 2.8 7.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.6 40.72 22035 1184 97.17 0.15154 0.14985 0.1621 0.18247 0.1904 RANDOM 17.732
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.12 -0.07 0.65 -0.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.049 r_dihedral_angle_4_deg 27.633 r_dihedral_angle_3_deg 11.944 r_long_range_B_refined 7.766 r_long_range_B_other 7.328 r_dihedral_angle_1_deg 7.07 r_scangle_other 3.47 r_scbond_it 2.274 r_scbond_other 2.219 r_mcangle_it 2.096
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.049 r_dihedral_angle_4_deg 27.633 r_dihedral_angle_3_deg 11.944 r_long_range_B_refined 7.766 r_long_range_B_other 7.328 r_dihedral_angle_1_deg 7.07 r_scangle_other 3.47 r_scbond_it 2.274 r_scbond_other 2.219 r_mcangle_it 2.096 r_mcangle_other 2.095 r_angle_refined_deg 1.889 r_mcbond_it 1.277 r_mcbond_other 1.276 r_angle_other_deg 0.846 r_chiral_restr 0.107 r_bond_refined_d 0.017 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1332 Nucleic Acid Atoms Solvent Atoms 301 Heterogen Atoms 54
Software Software Software Name Purpose REFMAC refinement Coot model building PHASER phasing Aimless data scaling XDS data reduction Blu-Ice data collection