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Crystal Structure of TRIAP1-MBP fusion
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1HSJ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.6 293 100 mM sodium acetate, 25% (w/v) PEG 4000, 18% (w/v) MPD, 200 mM ammonium sulphate
Crystal Properties Matthews coefficient Solvent content 2.08 40.74
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 75.39 α = 90 b = 56.01 β = 106.35 c = 100.28 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2014-05-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.97949 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.12 48.41 98.7 0.093 9.3 3.6 45307 35.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.12 2.18 94 0.585 2.2 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1hsj 2.12 48.41 43048 2246 98.61 0.19813 0.19585 0.2045 0.24163 0.2437 RANDOM 42.257
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.56 -2.01 -1.01 0.54
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.067 r_dihedral_angle_4_deg 15.402 r_dihedral_angle_3_deg 15.037 r_dihedral_angle_1_deg 5.664 r_long_range_B_refined 5.023 r_long_range_B_other 4.993 r_angle_other_deg 3.863 r_scangle_other 3.568 r_mcangle_it 2.249 r_mcangle_other 2.249
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.067 r_dihedral_angle_4_deg 15.402 r_dihedral_angle_3_deg 15.037 r_dihedral_angle_1_deg 5.664 r_long_range_B_refined 5.023 r_long_range_B_other 4.993 r_angle_other_deg 3.863 r_scangle_other 3.568 r_mcangle_it 2.249 r_mcangle_other 2.249 r_scbond_it 2.164 r_scbond_other 2.164 r_angle_refined_deg 1.47 r_mcbond_it 1.397 r_mcbond_other 1.397 r_chiral_restr 0.084 r_bond_refined_d 0.013 r_gen_planes_other 0.01 r_gen_planes_refined 0.006 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6446 Nucleic Acid Atoms Solvent Atoms 266 Heterogen Atoms 46
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling PHASER phasing