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MycF mycinamicin III 3'-O-methyltransferase in complex with Mg
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 293.1 20-30% PEG 3350, 100 mM BisTrisPropane, pH 6.5
Crystal Properties Matthews coefficient Solvent content 2.07 40.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 123.864 α = 90 b = 148.587 β = 120.23 c = 66.855 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2010-02-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D 0.97944 APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.49 86.85 100 0.08 13.3 5.8 36246
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.49 45.6 34422 1811 99.31 0.18014 0.17828 0.1778 0.21695 0.2167 RANDOM 60.453
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.18 1.46 -1.49 -1.42
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.021 r_dihedral_angle_4_deg 18.001 r_dihedral_angle_3_deg 15.492 r_long_range_B_refined 9.031 r_long_range_B_other 9.024 r_scangle_other 6.591 r_dihedral_angle_1_deg 6.047 r_mcangle_it 5.01 r_mcangle_other 5.009 r_scbond_it 4.177
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.021 r_dihedral_angle_4_deg 18.001 r_dihedral_angle_3_deg 15.492 r_long_range_B_refined 9.031 r_long_range_B_other 9.024 r_scangle_other 6.591 r_dihedral_angle_1_deg 6.047 r_mcangle_it 5.01 r_mcangle_other 5.009 r_scbond_it 4.177 r_scbond_other 4.176 r_mcbond_it 3.201 r_mcbond_other 3.201 r_angle_refined_deg 1.701 r_angle_other_deg 1.218 r_chiral_restr 0.094 r_bond_refined_d 0.016 r_gen_planes_refined 0.009 r_bond_other_d 0.007 r_gen_planes_other 0.007 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6315 Nucleic Acid Atoms Solvent Atoms 135 Heterogen Atoms 8
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction DENZO data reduction PHENIX phasing