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X-ray structure of bGFP-C / EGFP complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1JBZ EGFP PDB entry 1JBZ, 6-helix motif from alphaRep4 PDB entry 3LTJ experimental model PDB 3LTJ EGFP PDB entry 1JBZ, 6-helix motif from alphaRep4 PDB entry 3LTJ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.9 293 50 mM tricine pH 6.9, 25% PEG4K
Crystal Properties Matthews coefficient Solvent content 2.24 45.04
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 105.52 α = 90 b = 71.55 β = 100.72 c = 179.2 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2014-03-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 0.97918 SOLEIL PROXIMA 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.4 46.7 96.5 0.1 10.85 3.5 17746
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.4 3.6 80.2 0.54 2.03 2.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT EGFP PDB entry 1JBZ, 6-helix motif from alphaRep4 PDB entry 3LTJ 3.4 46.7 16858 888 96.48 0.21327 0.20918 0.2126 0.2919 0.2898 RANDOM 118.154
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.48 6.92 -3.86 2.54
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.925 r_long_range_B_refined 19.697 r_long_range_B_other 19.696 r_dihedral_angle_3_deg 19.268 r_dihedral_angle_4_deg 16.988 r_scangle_other 14.911 r_mcangle_it 14.461 r_mcangle_other 14.459 r_mcbond_it 9.367 r_mcbond_other 9.367
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.925 r_long_range_B_refined 19.697 r_long_range_B_other 19.696 r_dihedral_angle_3_deg 19.268 r_dihedral_angle_4_deg 16.988 r_scangle_other 14.911 r_mcangle_it 14.461 r_mcangle_other 14.459 r_mcbond_it 9.367 r_mcbond_other 9.367 r_scbond_it 9.269 r_scbond_other 9.268 r_dihedral_angle_1_deg 5.399 r_angle_refined_deg 1.442 r_angle_other_deg 0.982 r_chiral_restr 0.068 r_bond_refined_d 0.01 r_gen_planes_refined 0.006 r_bond_other_d 0.005 r_gen_planes_other 0.005 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9144 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing