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B-Raf Kinase domain in complex with PLX5568
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 277 0.1M MES AT PH6.0, 35% (V/V) 2-METHYL-
2,4-PENTANEDIOL 0.2M LI2SO4, VAPOR DIFFUSION, SITTING DROP,
TEMPERATURE 277K
Crystal Properties Matthews coefficient Solvent content 2.81 56.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 119.297 α = 90 b = 119.297 β = 90 c = 52.507 γ = 90
Symmetry Space Group P 43 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2006-11-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-1 0.979 SSRL BL9-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 119.523 99.8 6.9 13.6 26185 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.05 100
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 18.63 24901 1266 99.8 0.206 0.205 0.2132 0.238 0.2453 RANDOM 27.42
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.26 0.26 -0.51
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.008 r_angle_refined_deg 1.144 r_scangle_it 1.026 r_angle_other_deg 0.758 r_scbond_it 0.625 r_mcangle_it 0.379 r_symmetry_vdw_other 0.227 r_nbd_other 0.205 r_mcbond_it 0.199 r_nbd_refined 0.172
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.008 r_angle_refined_deg 1.144 r_scangle_it 1.026 r_angle_other_deg 0.758 r_scbond_it 0.625 r_mcangle_it 0.379 r_symmetry_vdw_other 0.227 r_nbd_other 0.205 r_mcbond_it 0.199 r_nbd_refined 0.172 r_xyhbond_nbd_refined 0.119 r_symmetry_vdw_refined 0.113 r_nbtor_other 0.08 r_symmetry_hbond_refined 0.078 r_chiral_restr 0.059 r_bond_refined_d 0.006 r_gen_planes_refined 0.003 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2079 Nucleic Acid Atoms Solvent Atoms 251 Heterogen Atoms 39
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling MOLREP phasing REFMAC refinement