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Crystal structure of the N-terminal domain of the human mitochondrial calcium uniporter fused with T4 lysozyme
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2LZM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 293 20% PEG 3350, 5% glycerol, 0.3 M ammonium sulphate and 0.1 M Bis-Tris-HCl (pH 5.5)
Crystal Properties Matthews coefficient Solvent content 2.91 57.72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 98.085 α = 90 b = 98.085 β = 90 c = 62.409 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2013-12-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 5C (4A) 0.9795 PAL/PLS 5C (4A)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 50 97.9 15.9 7.2 32604
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2LZM 1.8 48.5 29581 1536 98.2 0.13 0.127 0.1261 0.19 0.19 RANDOM 29.253
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.59 0.3 0.59 -1.92
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 48.541 r_dihedral_angle_2_deg 34.393 r_sphericity_bonded 21.789 r_dihedral_angle_4_deg 12.689 r_dihedral_angle_3_deg 11.764 r_long_range_B_refined 6.757 r_long_range_B_other 4.917 r_dihedral_angle_1_deg 4.74 r_scangle_other 3.59 r_mcangle_it 3.164
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 48.541 r_dihedral_angle_2_deg 34.393 r_sphericity_bonded 21.789 r_dihedral_angle_4_deg 12.689 r_dihedral_angle_3_deg 11.764 r_long_range_B_refined 6.757 r_long_range_B_other 4.917 r_dihedral_angle_1_deg 4.74 r_scangle_other 3.59 r_mcangle_it 3.164 r_mcangle_other 3.163 r_scbond_it 3.157 r_scbond_other 3.051 r_mcbond_it 2.585 r_mcbond_other 2.584 r_rigid_bond_restr 1.457 r_angle_refined_deg 1.334 r_angle_other_deg 0.894 r_chiral_restr 0.077 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2008 Nucleic Acid Atoms Solvent Atoms 431 Heterogen Atoms 15
Software Software Software Name Purpose REFMAC refinement Coot model building HKL-2000 data processing