☰ Navigation Tabs
The complex structure of C3cer exoenzyme and GTP bound RhoA (NADH-free state)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1A2B 1A2B, 3BW8 experimental model PDB 3BW8 1A2B, 3BW8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 277 100 mM MES (pH 6.4), 20% PEG1500
Crystal Properties Matthews coefficient Solvent content 2.15 42.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.745 α = 90 b = 50.745 β = 90 c = 135.871 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2014-11-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-5A 1 Photon Factory BL-5A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 50 100 39.3 5.7 36314
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1A2B, 3BW8 1.8 45.29 34457 1808 99.95 0.17714 0.17483 0.182 0.22274 0.2305 RANDOM 40.646
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.05 -0.03 -0.05 0.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.387 r_dihedral_angle_4_deg 16.142 r_dihedral_angle_3_deg 12.856 r_long_range_B_refined 7.766 r_long_range_B_other 7.766 r_scangle_other 6.117 r_dihedral_angle_1_deg 5.957 r_scbond_it 4.137 r_scbond_other 4.137 r_mcangle_it 4.113
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.387 r_dihedral_angle_4_deg 16.142 r_dihedral_angle_3_deg 12.856 r_long_range_B_refined 7.766 r_long_range_B_other 7.766 r_scangle_other 6.117 r_dihedral_angle_1_deg 5.957 r_scbond_it 4.137 r_scbond_other 4.137 r_mcangle_it 4.113 r_mcangle_other 4.113 r_mcbond_it 3.083 r_mcbond_other 3.073 r_angle_refined_deg 1.35 r_angle_other_deg 0.918 r_chiral_restr 0.085 r_bond_refined_d 0.009 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3069 Nucleic Acid Atoms Solvent Atoms 308 Heterogen Atoms 41
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHENIX phasing