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Crystal structure of ERK2 in complex with an inhibitor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 298 MES 100mM, (NH4)2SO4 200mM, beta-mercaptoethanol 20mM and 26% (w/v) PEG MME2000
Crystal Properties Matthews coefficient Solvent content 2.51 50.92
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.15 α = 90 b = 71.56 β = 109.13 c = 60.94 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 CCD ADSC QUANTUM 315r 2014-07-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM30A 0.9797 ESRF BM30A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 44.8 97.3 6.8 2.9 34272
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.8 44.8 34272 1804 97.41 0.1796 0.1776 0.185 0.218 0.2215 RANDOM 33.602
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.57 -0.11 0.54 0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.175 r_dihedral_angle_4_deg 20.951 r_dihedral_angle_3_deg 17.129 r_dihedral_angle_1_deg 5.442 r_mcangle_it 3.255 r_mcbond_it 2.135 r_mcbond_other 2.135 r_angle_refined_deg 1.417 r_angle_other_deg 0.784 r_chiral_restr 0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.175 r_dihedral_angle_4_deg 20.951 r_dihedral_angle_3_deg 17.129 r_dihedral_angle_1_deg 5.442 r_mcangle_it 3.255 r_mcbond_it 2.135 r_mcbond_other 2.135 r_angle_refined_deg 1.417 r_angle_other_deg 0.784 r_chiral_restr 0.09 r_bond_refined_d 0.01 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2839 Nucleic Acid Atoms Solvent Atoms 126 Heterogen Atoms 18
Software Software Software Name Purpose XDS data reduction REFMAC refinement PDB_EXTRACT data extraction SCALA data scaling REFMAC phasing