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Tailspike protein double mutant D339N/E372A of E. coli bacteriophage HK620
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4AVZ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 298 0.1 M Tris-HCl, 3.5 M Sodiumformate
Crystal Properties Matthews coefficient Solvent content 2.15 42.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.176 α = 90 b = 74.176 β = 90 c = 174.695 γ = 120
Symmetry Space Group P 3 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX-225 mirrors 2012-11-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.91841 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 43.67 99.6 0.101 0.044 0.999 15.7 6.1 48154
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.89 94.5 0.859 0.382 0.665 2 5.9 2784
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4AVZ 1.85 43.67 48154 2407 99.62 0.1505 0.1479 0.1591 0.199 0.2094 RANDOM 22.597
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.76 0.38 0.76 -2.48
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.625 r_dihedral_angle_4_deg 15.786 r_dihedral_angle_3_deg 11.538 r_dihedral_angle_1_deg 7.124 r_angle_refined_deg 1.781 r_mcangle_it 0.974 r_angle_other_deg 0.874 r_mcbond_other 0.668 r_mcbond_it 0.667 r_chiral_restr 0.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.625 r_dihedral_angle_4_deg 15.786 r_dihedral_angle_3_deg 11.538 r_dihedral_angle_1_deg 7.124 r_angle_refined_deg 1.781 r_mcangle_it 0.974 r_angle_other_deg 0.874 r_mcbond_other 0.668 r_mcbond_it 0.667 r_chiral_restr 0.14 r_bond_refined_d 0.017 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4543 Nucleic Acid Atoms Solvent Atoms 555 Heterogen Atoms 27
Software Software Software Name Purpose XDS data reduction Aimless data scaling PHASER phasing ARP model building Coot model building REFMAC refinement PDB_EXTRACT data extraction