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X-ray structure of bGFP-A / EGFP complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1JBZ 1JBZ, 3LTJ experimental model PDB 3LTJ 1JBZ, 3LTJ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.05M MgAc, 0.1M NaAc, 5%-15% PEG 8K
Crystal Properties Matthews coefficient Solvent content 2.09 41.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.28 α = 90 b = 45.98 β = 90.76 c = 74.89 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2014-02-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 0.97857 SOLEIL PROXIMA 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 39.2 98.5 0.052 14.3 3 33143
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.1 98.1 0.77 2 3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1JBZ, 3LTJ 2 39.18 31479 1657 98.52 0.208 0.20477 0.213 0.26799 0.2711 RANDOM 49.121
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.22 -0.66 4.54 -4.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.262 r_dihedral_angle_3_deg 16.253 r_dihedral_angle_4_deg 15.796 r_long_range_B_refined 8.383 r_long_range_B_other 8.372 r_scangle_other 6.831 r_dihedral_angle_1_deg 6.155 r_mcangle_other 4.804 r_mcangle_it 4.803 r_scbond_it 4.528
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.262 r_dihedral_angle_3_deg 16.253 r_dihedral_angle_4_deg 15.796 r_long_range_B_refined 8.383 r_long_range_B_other 8.372 r_scangle_other 6.831 r_dihedral_angle_1_deg 6.155 r_mcangle_other 4.804 r_mcangle_it 4.803 r_scbond_it 4.528 r_scbond_other 4.527 r_mcbond_it 3.564 r_mcbond_other 3.557 r_angle_refined_deg 1.746 r_angle_other_deg 0.832 r_chiral_restr 0.089 r_bond_refined_d 0.014 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3687 Nucleic Acid Atoms Solvent Atoms 103 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing